Analyze exact selected sources in first-request order before unrelated
static scopes, preserving full artifact identity and byte verification.
Retain selection in CLI/MCP Evidence and summaries, with explicit unknowns
and partial coverage for unselected sources. Keep default full analysis.
Fixes#1848
Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Select the shallowest inventoried nondependency manifest and retain dependency package evidence without assigning Electron entry roles. Keep the artifact root when no application manifest is observed.
Adapted from PR #1392, with compiled CLI and stdio MCP regressions for root selection and dependency-only inputs.
Co-authored-by: Marnix Pluim <marnixpluim@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Build package, JSON-module and source-map indexes once instead of rescanning every observation list per file. Preserve first-observation lookup semantics when paths repeat and share each JSON lookup with the file projection.
Validation: duplicate-observation consumer regression and reconstruction suites. Flameox captured before/after CPU profiles on 3,000 JSON files; the complete CLI output stayed byte-identical. Exploratory samples do not establish an end-to-end timing improvement.
